PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9268_iso_9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 344aa    MW: 40244.6 Da    PI: 7.1352
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9268_iso_9genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.64.3e-1179120446
                                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                          W + E++ll++++k++G g+W  +a+++g ++ + qc +++++
  cra_locus_9268_iso_9_len_1677_ver_3  79 WNAKEELLLLEGIKMYGFGNWYEVAEHVG-TKDRTQCLDHYNS 120
                                          *****************************.999999*****85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250248.0E-1017343IPR016827Transcriptional adaptor 2
SMARTSM002912.5E-61560IPR000433Zinc finger, ZZ-type
SuperFamilySSF578501.65E-121982No hitNo description
PROSITE profilePS501359.9691962IPR000433Zinc finger, ZZ-type
CDDcd023355.28E-171967No hitNo description
PfamPF005691.0E-61951IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135702148IPR000433Zinc finger, ZZ-type
SuperFamilySSF466892.09E-1274125IPR009057Homeodomain-like
PROSITE profilePS5129320.33174126IPR017884SANT domain
SMARTSM007172.0E-875124IPR001005SANT/Myb domain
PfamPF002491.2E-1078120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-878121IPR009057Homeodomain-like
CDDcd001672.74E-979121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
METAYAGEGQ TVREEKVFYQ CNYCNKDIYR KIHIKCLRCS DFNLCVECFS VAAEVYPHRS  60
NHPYTVMDNL FFPLMCTDWN AKEELLLLEG IKMYGFGNWY EVAEHVGTKD RTQCLDHYNS  120
IYVHSPCVPV QEKYTEHLSM AHRQIIKDVS TKSVCDGNNA LAEGAKRAPG VIESNDSHSK  180
SKEDCNAEGS VREKQARTSV EFVTEYGNDA QQLLADIEFK ETDTDDEREL KLRVLRFYSK  240
RLDERKCRKK FLLERNLLHP HLVETYLSPE EKEICRPYRV FMRYHSTEEH ANLLRTVVEE  300
HRIRKRIQDL KDARAAGCRT PTEVERYIEQ KSKRMKESTR AGPC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009803649.11e-134PREDICTED: transcriptional adapter ADA2-like isoform X3
RefseqXP_016449025.11e-134PREDICTED: transcriptional adapter ADA2-like isoform X2
SwissprotQ75LL61e-112TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A0J8C3V11e-132A0A0J8C3V1_BETVU; Uncharacterized protein
STRINGGLYMA09G01501.11e-122(Glycine max)